Since the diffusion process of the stack anode gas exists fractional properties, the proton exchange membrane fuel cell(PEMFC) temperature and output voltage fractional order model is established. Based on the fractional model, the fractional PI$^ \lambda D^μ controller is proposed by combining fractional order PI$^ \lambda D^μ control and fuzzy control. The PEMFC output voltage can maintain the best state under the load disturbance by controlling the hydrogen flow rate. Simulation results show that the fuzzy fractional PI$^ \lambda D^μ controller can improve the performance of the real time anti-jamming and steadystate of the system.